Parses a GMT file as downloadable from MSigDB (presented in Subramanian et al.) and returns a list of gene sets.
parseGmt(file)A named list of gene sets.
A file name.
Parses a GMT file and returns a list of gene sets. Each list element named according to the included gene set. The gene set files can be downloaded from http://www.broadinstitute.org/gsea/msigdb.
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S., Mesirov, J. P. (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of the National Academy of Science of the United States of America, 102, 15545--15550.
geneSetAnalysis, predefinedAnalyses, gsAnalysis